WormBase Tree Display for CDS: PPA34710
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PPA34710 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-35.16 | ||
DB_remark | PPA-CCT-7 protein; contains similarity to Pfam domain PF00118 (TCP-1/cpn60 chaperonin family); contains similarity to Interpro domains IPR012720 (T-complex protein 1, eta subunit), IPR027410 (TCP-1-like chaperonin intermediate domain superfamily), IPR027413 (GroEL-like equatorial domain superfamily), IPR017998 (Chaperone tailless complex polypeptide 1 (TCP-1)), IPR027409 (GroEL-like apical domain superfamily), IPR002423 (Chaperonin Cpn60/GroEL/TCP-1 family) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273079 | ||||
Corresponding_transcript | PPA34710.1 | |||||
Corresponding_protein | PP57314 | |||||
Corresponding_oligo_set | GPL14372_Probes_35385 | |||||
Matching_cDNA | AW115016 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_35385 | |||||
RNASeq_FPKM | WBls:0000032 | 18.3063 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |