WormBase Tree Display for CDS: PPA34725
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PPA34725 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 441 | |||
541 | 561 | |||||
606 | 752 | |||||
1259 | 1393 | |||||
1731 | 1894 | |||||
2324 | 2413 | |||||
2964 | 3054 | |||||
3837 | 3935 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-38.33 | ||
DB_remark | PPA-DLAT-1 protein; contains similarity to Pfam domains PF00198 (2-oxoacid dehydrogenases acyltransferase (catalytic domain)), PF02817 (e3 binding domain); contains similarity to Interpro domains IPR004167 (Peripheral subunit-binding domain), IPR036625 (E3-binding domain superfamily), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR023213 (Chloramphenicol acetyltransferase-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273094 | ||||
Corresponding_transcript | PPA34725.1 | |||||
Corresponding_protein | PP71992 | |||||
Matching_cDNA | FE939883 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |