WormBase Tree Display for CDS: PPA34783
expand all nodes | collapse all nodes | view schema
PPA34783 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (37) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-44.9 | ||
DB_remark | contains similarity to Pfam domains PF00520 (Ion transport protein), PF12796 (Ankyrin repeats (3 copies)), PF13606 (Ankyrin repeat); contains similarity to Interpro domains IPR024862 (Transient receptor potential cation channel subfamily V), IPR002110 (Ankyrin repeat), IPR020683 (Domain of unknown function DUF3447), IPR005821 (Ion transport domain), IPR036770 (Ankyrin repeat-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273152 | ||||
Corresponding_transcript | PPA34783.1 | |||||
Corresponding_protein | PP52928 | |||||
Corresponding_oligo_set | GPL14372_Probes_36229 | |||||
GPL14372_Probes_36230 | ||||||
GPL14372_Probes_36231 | ||||||
Microarray_results | GPL14372_Probes_36229 | |||||
GPL14372_Probes_36230 | ||||||
GPL14372_Probes_36231 | ||||||
RNASeq_FPKM | WBls:0000032 | 10.8039 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |