WormBase Tree Display for CDS: PPA34786
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PPA34786 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (35) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-45.2 | ||
DB_remark | contains similarity to Pfam domain PF00297 (Ribosomal protein L3); contains similarity to Interpro domains IPR009000 (Translation protein, beta-barrel domain superfamily), IPR013087 (Zinc finger C2H2-type), IPR000597 (Large ribosomal subunit protein uL3) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273155 | ||||
Corresponding_transcript | PPA34786.1 | |||||
Corresponding_protein | PP56981 | |||||
Corresponding_oligo_set | GPL14372_Probes_36236 | |||||
GPL14372_Probes_36237 | ||||||
GPL14372_Probes_36238 | ||||||
Microarray_results | GPL14372_Probes_36236 | |||||
GPL14372_Probes_36237 | ||||||
GPL14372_Probes_36238 | ||||||
RNASeq_FPKM | WBls:0000032 | 3.29405 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |