WormBase Tree Display for CDS: PPA34808

PPA34808 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 91
      346 414
      590 695
      989 1068
      1113 1184
      1255 1386
      1432 1490
      1546 1600
      1938 2033
      2112 2197
  DB_info: Database: pristionchus.org cds gene-UMM-S7-48.20
    DB_remark: PPA-SMOC-1 protein; contains similarity to Pfam domains PF00086 (Thyroglobulin type-1 repeat), PF10591 (Secreted protein acidic and rich in cysteine Ca binding region); contains similarity to Interpro domains IPR000716 (Thyroglobulin type-1), IPR036857 (Thyroglobulin type-1 superfamily), IPR011992 (EF-hand domain pair), IPR019577 (SPARC/Testican, calcium-binding domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Predicted
  Visible: Gene: WBGene00273177
    Corresponding_transcript: PPA34808.1
    Corresponding_protein: PP52048
    Corresponding_oligo_set: GPL14372_Probes_36320
      GPL14372_Probes_36321
      GPL14372_Probes_36322
    Microarray_results: GPL14372_Probes_36320
      GPL14372_Probes_36321
      GPL14372_Probes_36322
    RNASeq_FPKM: WBls:0000032 10.0393 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
  Method: curated