WormBase Tree Display for CDS: PPA34820
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PPA34820 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 108 | |||
476 | 602 | |||||
681 | 1303 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-50.33 | ||
DB_remark | contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00273189 | ||||
Corresponding_transcript | PPA34820.1 | |||||
Corresponding_protein | PP10811 | |||||
Corresponding_oligo_set | GPL14372_Probes_53327 | |||||
Matching_cDNA | AI989082 | Inferred_automatically | transcript_builder.pl | |||
FE939264 | Inferred_automatically | transcript_builder.pl | ||||
FE931805 | Inferred_automatically | transcript_builder.pl | ||||
FE941826 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_53327 | |||||
RNASeq_FPKM | WBls:0000032 | 4.86098 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |