WormBase Tree Display for CDS: PPA34825
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PPA34825 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (27) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-52.33 | ||
DB_remark | contains similarity to Pfam domains PF00066 (LNR domain), PF12796 (Ankyrin repeats (3 copies)); contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR000800 (Notch domain), IPR035993 (Notch-like domain superfamily), IPR020683 (Domain of unknown function DUF3447), IPR000742 (EGF-like domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273194 | ||||
Corresponding_transcript | PPA34825.1 | |||||
Corresponding_protein | PP73346 | |||||
Corresponding_oligo_set | GPL14372_Probes_53385 | |||||
GPL14372_Probes_53386 | ||||||
GPL14372_Probes_53387 | ||||||
Microarray_results | GPL14372_Probes_53385 | |||||
GPL14372_Probes_53386 | ||||||
GPL14372_Probes_53387 | ||||||
RNASeq_FPKM | WBls:0000032 | 3.74307 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.366 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |