WormBase Tree Display for CDS: PPA34826
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| PPA34826 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-53.29 | ||
| DB_remark | contains similarity to Pfam domains PF00294 (pfkB family carbohydrate kinase), PF04227 (Indigoidine synthase A like protein); contains similarity to Interpro domains IPR029056 (Ribokinase-like), IPR011611 (Carbohydrate kinase PfkB), IPR022830 (Indigoidine synthase A-like), IPR007342 (Pseudouridine-5'-phosphate glycosidase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00273195 | ||||
| Corresponding_transcript | PPA34826.1 | |||||
| Corresponding_protein | PP54512 | |||||
| Corresponding_oligo_set | GPL14372_Probes_53431 | |||||
| GPL14372_Probes_53432 | ||||||
| GPL14372_Probes_53433 | ||||||
| GPL14372_Probes_53434 | ||||||
| GPL14372_Probes_53435 | ||||||
| GPL14372_Probes_53442 | ||||||
| GPL14372_Probes_53444 | ||||||
| Matching_cDNA | BI500531 | Inferred_automatically | transcript_builder.pl | |||
| BI500213 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_53431 | |||||
| GPL14372_Probes_53432 | ||||||
| GPL14372_Probes_53433 | ||||||
| GPL14372_Probes_53434 | ||||||
| GPL14372_Probes_53435 | ||||||
| GPL14372_Probes_53442 | ||||||
| GPL14372_Probes_53444 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.75489 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 6.21754 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
