WormBase Tree Display for CDS: PPA34841
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PPA34841 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-56.26 | ||
DB_remark | contains similarity to Pfam domains PF00561 (alpha/beta hydrolase fold), PF01812 (5-formyltetrahydrofolate cyclo-ligase family); contains similarity to Interpro domains IPR037171 (NagB/RpiA transferase-like), IPR029058 (Alpha/Beta hydrolase fold), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain superfamily), IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR000073 (Alpha/beta hydrolase fold-1) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273210 | ||||
Corresponding_transcript | PPA34841.1 | |||||
Corresponding_protein | PP53042 | |||||
Corresponding_oligo_set | GPL14372_Probes_53552 | |||||
GPL14372_Probes_53553 | ||||||
GPL14372_Probes_53554 | ||||||
GPL14372_Probes_53555 | ||||||
Microarray_results | GPL14372_Probes_53552 | |||||
GPL14372_Probes_53553 | ||||||
GPL14372_Probes_53554 | ||||||
GPL14372_Probes_53555 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.79237 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |