WormBase Tree Display for CDS: PPA34842
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PPA34842 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 126 | |||
364 | 462 | |||||
623 | 701 | |||||
1190 | 1263 | |||||
1608 | 1880 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-56.28 | ||
DB_remark | PPA-RNT-1.2 protein; contains similarity to Pfam domain PF00853 (Runt domain); contains similarity to Interpro domains IPR012346 (p53/RUNT-type transcription factor, DNA-binding domain superfamily), IPR000040 (Acute myeloid leukemia 1 protein (AML1)/Runt), IPR008967 (p53-like transcription factor, DNA-binding domain superfamily), IPR013524 (Runt domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273211 | ||||
Corresponding_transcript | PPA34842.1 | |||||
Corresponding_protein | PP59200 | |||||
Corresponding_oligo_set | GPL14372_Probes_8606 | |||||
Microarray_results | GPL14372_Probes_8606 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |