WormBase Tree Display for CDS: PPA34845
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PPA34845 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-57.21 | ||
DB_remark | contains similarity to Pfam domain PF00478 (IMP dehydrogenase / GMP reductase domain); contains similarity to Interpro domains IPR005993 (GMP reductase), IPR013785 (Aldolase-type TIM barrel), IPR001093 (IMP dehydrogenase/GMP reductase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273214 | ||||
Corresponding_transcript | PPA34845.1 | |||||
Corresponding_protein | PP17262 | |||||
Corresponding_oligo_set | GPL14372_Probes_53559 | |||||
GPL14372_Probes_53560 | ||||||
Matching_cDNA | FG100368 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_53559 | |||||
GPL14372_Probes_53560 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.41257 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.133 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |