WormBase Tree Display for CDS: PPA34854
expand all nodes | collapse all nodes | view schema
PPA34854 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-59.22 | ||
DB_remark | PPA-GOT-1.2.2 protein; contains similarity to Pfam domain PF00155 (Aminotransferase class I and II); contains similarity to Interpro domains IPR015424 (Pyridoxal phosphate-dependent transferase), IPR004839 (Aminotransferase, class I/classII), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain), IPR000796 (Aspartate/other aminotransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273223 | ||||
Corresponding_transcript | PPA34854.1 | |||||
Corresponding_protein | PP63453 | |||||
Corresponding_oligo_set | GPL14372_Probes_8681 | |||||
GPL14372_Probes_8682 | ||||||
GPL14372_Probes_8683 | ||||||
Microarray_results | GPL14372_Probes_8681 | |||||
GPL14372_Probes_8682 | ||||||
GPL14372_Probes_8683 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |