WormBase Tree Display for CDS: PPA34922
expand all nodes | collapse all nodes | view schema
| PPA34922 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-71.19 | ||
| DB_remark | contains similarity to Pfam domains PF00008 (EGF-like domain), PF00066 (LNR domain), PF00746 (LPXTG cell wall anchor motif), PF06816 (NOTCH protein), PF07645 (Calcium-binding EGF domain), PF07684 (NOTCH protein), PF07974 (EGF-like domain), PF12661 (Human growth factor-like EGF), PF12796 (Ankyrin repeats (3 copies)); contains similarity to Interpro domains IPR011656 (Notch, NODP domain), IPR002110 (Ankyrin repeat), IPR001881 (EGF-like calcium-binding domain), IPR000800 (Notch domain), IPR035993 (Notch-like domain superfamily), IPR020683 (Domain of unknown function DUF3447), IPR000742 (EGF-like domain), IPR019948 (), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR010660 (Notch, NOD domain), IPR013032 (EGF-like, conserved site), IPR013111 (EGF-like domain, extracellular) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00273291 | ||||
| Corresponding_transcript | PPA34922.1 | |||||
| Corresponding_protein | PP60830 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
