WormBase Tree Display for CDS: PPA34931
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PPA34931 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-75.32 | ||
DB_remark | contains similarity to Pfam domain PF01063 (Amino-transferase class IV); contains similarity to Interpro domains IPR036038 (Aminotransferase-like, PLP-dependent enzymes), IPR005786 (Branched-chain amino acid aminotransferase II), IPR001544 (Aminotransferase class IV), IPR043131 (Branched-chain-amino-acid aminotransferase-like, N-terminal), IPR043132 (Branched-chain-amino-acid aminotransferase-like, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273300 | ||||
Corresponding_transcript | PPA34931.1 | |||||
Corresponding_protein | PP66979 | |||||
Corresponding_oligo_set | GPL14372_Probes_60118 | |||||
GPL14372_Probes_60119 | ||||||
Matching_cDNA | FE934166 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_60118 | |||||
GPL14372_Probes_60119 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |