WormBase Tree Display for CDS: PPA34960
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| PPA34960 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-80.31 | ||
| DB_remark | contains similarity to Pfam domains PF00211 (Adenylate and Guanylate cyclase catalytic domain), PF01094 (Receptor family ligand binding region), PF07701 (Heme NO binding associated), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR011645 (Haem NO binding associated), IPR001170 (Adenylyl cyclase class-4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR029787 (Nucleotide cyclase), IPR001828 (Receptor, ligand binding region), IPR028082 (Periplasmic binding protein-like I), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00273329 | ||||
| Corresponding_transcript | PPA34960.1 | |||||
| Corresponding_protein | PP70890 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
