WormBase Tree Display for CDS: PPA34980
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| PPA34980 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (41) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-84.9 | ||
| DB_remark | contains similarity to Pfam domains PF00059 (Lectin C-type domain), PF00083 (Sugar (and other) transporter), PF00092 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR036259 (MFS transporter superfamily), IPR002035 (von Willebrand factor, type A), IPR016187 (C-type lectin fold), IPR005828 (Major facilitator, sugar transporter-like), IPR003663 (Sugar/inositol transporter) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00273349 | ||||
| Corresponding_transcript | PPA34980.1 | |||||
| Corresponding_protein | PP64180 | |||||
| Corresponding_oligo_set | GPL14372_Probes_51634 | |||||
| GPL14372_Probes_51636 | ||||||
| GPL14372_Probes_54044 | ||||||
| GPL14372_Probes_54045 | ||||||
| GPL14372_Probes_8887 | ||||||
| GPL14372_Probes_8888 | ||||||
| GPL14372_Probes_8889 | ||||||
| Microarray_results | GPL14372_Probes_8887 | |||||
| GPL14372_Probes_8888 | ||||||
| GPL14372_Probes_8889 | ||||||
| GPL14372_Probes_51634 | ||||||
| GPL14372_Probes_51636 | ||||||
| GPL14372_Probes_54044 | ||||||
| GPL14372_Probes_54045 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.935767 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.10508 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
