WormBase Tree Display for CDS: PPA35045
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PPA35045 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-97.2 | ||
DB_remark | contains similarity to Pfam domains PF00831 (Ribosomal L29 protein), PF00995 (Sec1 family); contains similarity to Interpro domains IPR001619 (Sec1-like protein), IPR001854 (Large ribosomal subunit protein uL29), IPR043127 (Sec1-like, domain 3a), IPR036049 (Large ribosomal subunit protein uL29 superfamily), IPR043154 (Sec1-like, domain 1), IPR036045 (Sec1-like superfamily), IPR027482 (Sec1-like, domain 2) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273414 | ||||
Corresponding_transcript | PPA35045.1 | |||||
Corresponding_protein | PP59274 | |||||
Corresponding_oligo_set | GPL14372_Probes_54157 | |||||
GPL14372_Probes_54158 | ||||||
Matching_cDNA (70) | ||||||
Microarray_results | GPL14372_Probes_54157 | |||||
GPL14372_Probes_54158 | ||||||
RNASeq_FPKM | WBls:0000032 | 56.3483 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.69701 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |