WormBase Tree Display for CDS: PPA35107
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PPA35107 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-5.10 | ||
DB_remark | contains similarity to Pfam domain PF00011 (Hsp20/alpha crystallin family); contains similarity to Interpro domains IPR002068 (Alpha crystallin/Hsp20 domain), IPR008978 (HSP20-like chaperone), IPR001436 (Alpha crystallin/Small heat shock protein, animal type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273476 | ||||
Corresponding_transcript | PPA35107.1 | |||||
Corresponding_protein | PP63519 | |||||
Corresponding_oligo_set | GPL14372_Probes_27410 | |||||
GPL14372_Probes_27411 | ||||||
GPL14372_Probes_82375 | ||||||
Microarray_results | GPL14372_Probes_27410 | |||||
GPL14372_Probes_27411 | ||||||
GPL14372_Probes_82375 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.80553 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.90106 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |