WormBase Tree Display for CDS: PPA35202
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| PPA35202 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (18) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-21.16 | ||
| DB_remark | PPA-VHA-9 protein; contains similarity to Pfam domain PF01990 (ATP synthase (F/14-kDa) subunit); contains similarity to Interpro domains IPR036906 (ATPase, V1 complex, subunit F superfamily), IPR005772 (ATPase, V1 complex, subunit F, eukaryotic), IPR008218 (ATPase, V1 complex, subunit F) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00273571 | ||||
| Corresponding_transcript | PPA35202.1 | |||||
| Corresponding_protein | PP66214 | |||||
| Corresponding_oligo_set | GPL14372_Probes_46467 | |||||
| Matching_cDNA | EB182535 | Inferred_automatically | transcript_builder.pl | |||
| AA193945 | Inferred_automatically | transcript_builder.pl | ||||
| FG095495 | Inferred_automatically | transcript_builder.pl | ||||
| FG096270 | Inferred_automatically | transcript_builder.pl | ||||
| AA116136 | Inferred_automatically | transcript_builder.pl | ||||
| BM320037 | Inferred_automatically | transcript_builder.pl | ||||
| FE933843 | Inferred_automatically | transcript_builder.pl | ||||
| FG096810 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_46467 | |||||
| RNASeq_FPKM | WBls:0000032 | 75.5415 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 54.9017 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
