WormBase Tree Display for CDS: PPA35245
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PPA35245 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
202 | 336 | |||||
631 | 717 | |||||
787 | 866 | |||||
977 | 1065 | |||||
1121 | 1239 | |||||
1355 | 1429 | |||||
1630 | 1674 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-27.70 | ||
DB_remark | contains similarity to Pfam domains PF01000 (RNA polymerase Rpb3/RpoA insert domain), PF01193 (RNA polymerase Rpb3/Rpb11 dimerisation domain); contains similarity to Interpro domains IPR036603 (RNA polymerase, RBP11-like subunit), IPR011263 (DNA-directed RNA polymerase, RpoA/D/Rpb3-type), IPR036643 (DNA-directed RNA polymerase, insert domain superfamily), IPR011262 (DNA-directed RNA polymerase, insert domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273614 | ||||
Corresponding_transcript | PPA35245.1 | |||||
Corresponding_protein | PP52467 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |