WormBase Tree Display for CDS: PPA35254
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PPA35254 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (57) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-29.18 | ||
DB_remark | contains similarity to Pfam domains PF00059 (Lectin C-type domain), PF00092 (von Willebrand factor type A domain), PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR002035 (von Willebrand factor, type A), IPR016187 (C-type lectin fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273623 | ||||
Corresponding_transcript | PPA35254.1 | |||||
Corresponding_protein | PP57978 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |