WormBase Tree Display for CDS: PPA35304
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| PPA35304 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (22) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-34.21 | ||
| DB_remark | contains similarity to Pfam domains PF00249 (Myb-like DNA-binding domain), PF04433 (SWIRM domain), PF16495 (SWIRM-associated region 1), PF16498 (SWIRM-associated domain at the C-terminal); contains similarity to Interpro domains IPR032451 (SMARCC, C-terminal), IPR032448 (SMARCC, SWIRM-associated domain), IPR030087 (), IPR001005 (SANT/Myb domain), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily), IPR007526 (SWIRM domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00273673 | ||||
| Corresponding_transcript | PPA35304.1 | |||||
| Corresponding_protein | PP73409 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
