WormBase Tree Display for CDS: PPA35345
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PPA35345 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
335 | 382 | |||||
429 | 549 | |||||
626 | 718 | |||||
1133 | 1260 | |||||
1304 | 1351 | |||||
1405 | 1525 | |||||
1667 | 1767 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-43.10 | ||
DB_remark | PPA-PFN-1.2 protein; contains similarity to Pfam domain PF00235 (Profilin); contains similarity to Interpro domains IPR036140 (Profilin superfamily), IPR005455 (Profilin, eukaryotic type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273714 | ||||
Corresponding_transcript | PPA35345.1 | |||||
Corresponding_protein | PP57360 | |||||
Corresponding_oligo_set | GPL14372_Probes_32658 | |||||
GPL14372_Probes_32659 | ||||||
GPL14372_Probes_32660 | ||||||
GPL14372_Probes_32662 | ||||||
Microarray_results | GPL14372_Probes_32658 | |||||
GPL14372_Probes_32659 | ||||||
GPL14372_Probes_32660 | ||||||
GPL14372_Probes_32662 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.129 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |