WormBase Tree Display for CDS: PPA35391
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PPA35391 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-49.26 | ||
DB_remark | contains similarity to Pfam domain PF06221 (Putative zinc finger motif, C2HC5-type); contains similarity to Interpro domain IPR009349 (TRIP4/RQT4, C2HC5-type zinc finger) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273760 | ||||
Corresponding_transcript | PPA35391.1 | |||||
Corresponding_protein | PP59136 | |||||
Corresponding_oligo_set | GPL14372_Probes_81237 | |||||
GPL14372_Probes_81238 | ||||||
GPL14372_Probes_81239 | ||||||
Matching_cDNA | BQ087758 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_81237 | |||||
GPL14372_Probes_81238 | ||||||
GPL14372_Probes_81239 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.62676 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 57.0483 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |