WormBase Tree Display for CDS: PPA35447
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PPA35447 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 120 | |||
179 | 289 | |||||
442 | 518 | |||||
700 | 766 | |||||
929 | 1012 | |||||
1255 | 1371 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-61.61 | ||
DB_remark | PPA-MRPL-20 protein; contains similarity to Pfam domain PF00453 (Ribosomal protein L20); contains similarity to Interpro domains IPR005813 (Large ribosomal subunit protein bL20), IPR035566 (Ribosomal protein bL20, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00273816 | ||||
Corresponding_transcript | PPA35447.1 | |||||
Corresponding_protein | PP20626 | |||||
Corresponding_oligo_set | GPL14372_Probes_65589 | |||||
GPL14372_Probes_65594 | ||||||
Matching_cDNA | AA193721 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_65589 | |||||
GPL14372_Probes_65594 | ||||||
RNASeq_FPKM | WBls:0000032 | 24.3191 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 38.3102 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |