WormBase Tree Display for CDS: PPA35536
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PPA35536 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-79.40 | ||
DB_remark | PPA-IRE-1.1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF06479 (Ribonuclease 2-5A); contains similarity to Interpro domains IPR038357 (KEN domain superfamily), IPR011009 (Protein kinase-like domain superfamily), IPR010513 (KEN domain), IPR000719 (Protein kinase domain), IPR018997 (PUB domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273905 | ||||
Corresponding_transcript | PPA35536.1 | |||||
Corresponding_protein | PP60641 | |||||
Corresponding_oligo_set | GPL14372_Probes_12596 | |||||
GPL14372_Probes_12597 | ||||||
GPL14372_Probes_59134 | ||||||
Matching_cDNA | FG101613 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_12596 | |||||
GPL14372_Probes_12597 | ||||||
GPL14372_Probes_59134 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.69569 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |