WormBase Tree Display for CDS: PPA35566
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PPA35566 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 84 | |||
161 | 229 | |||||
317 | 394 | |||||
1098 | 1196 | |||||
1253 | 1327 | |||||
1392 | 1526 | |||||
1652 | 1708 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-84.73 | ||
DB_remark | contains similarity to Pfam domain PF00406 (Adenylate kinase); contains similarity to Interpro domains IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006266 (UMP-CMP kinase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00273935 | ||||
Corresponding_transcript | PPA35566.1 | |||||
Corresponding_protein | PP74209 | |||||
Corresponding_oligo_set | GPL14372_Probes_63608 | |||||
GPL14372_Probes_63610 | ||||||
GPL14372_Probes_63611 | ||||||
GPL14372_Probes_63612 | ||||||
Matching_cDNA | BI500381 | Inferred_automatically | transcript_builder.pl | |||
FG101901 | Inferred_automatically | transcript_builder.pl | ||||
FG103105 | Inferred_automatically | transcript_builder.pl | ||||
BI500736 | Inferred_automatically | transcript_builder.pl | ||||
FE934218 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_63608 | |||||
GPL14372_Probes_63610 | ||||||
GPL14372_Probes_63611 | ||||||
GPL14372_Probes_63612 | ||||||
RNASeq_FPKM | WBls:0000032 | 59.6891 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 103.047 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |