WormBase Tree Display for CDS: PPA35578
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PPA35578 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 48 | |||
124 | 219 | |||||
328 | 437 | |||||
500 | 557 | |||||
661 | 705 | |||||
826 | 899 | |||||
968 | 1056 | |||||
1232 | 1356 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-86.78 | ||
DB_remark | PPA-RAB-21 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain), IPR020849 (Small GTPase, Ras-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00273947 | ||||
Corresponding_transcript | PPA35578.1 | |||||
Corresponding_protein | PP69618 | |||||
Corresponding_oligo_set | GPL14372_Probes_15730 | |||||
GPL14372_Probes_15733 | ||||||
GPL14372_Probes_15734 | ||||||
Matching_cDNA | FG104897 | Inferred_automatically | transcript_builder.pl | |||
FG100626 | Inferred_automatically | transcript_builder.pl | ||||
FG102539 | Inferred_automatically | transcript_builder.pl | ||||
FG106475 | Inferred_automatically | transcript_builder.pl | ||||
FG104076 | Inferred_automatically | transcript_builder.pl | ||||
FG104690 | Inferred_automatically | transcript_builder.pl | ||||
FG103773 | Inferred_automatically | transcript_builder.pl | ||||
FG103982 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_15730 | |||||
GPL14372_Probes_15733 | ||||||
GPL14372_Probes_15734 | ||||||
RNASeq_FPKM | WBls:0000032 | 25.6115 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 143.717 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |