WormBase Tree Display for CDS: PPA35593
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PPA35593 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-90.95 | ||
DB_remark | contains similarity to Pfam domains PF01602 (Adaptin N terminal region), PF07718 (Coatomer beta C-terminal region), PF14806 (Coatomer beta subunit appendage platform); contains similarity to Interpro domains IPR029446 (Coatomer beta subunit, appendage platform domain), IPR011710 (Coatomer beta subunit, C-terminal), IPR016460 (Coatomer beta subunit (COPB1)), IPR011989 (Armadillo-like helical), IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00273962 | ||||
Corresponding_transcript | PPA35593.1 | |||||
Corresponding_protein | PP56002 | |||||
Corresponding_oligo_set | GPL14372_Probes_63968 | |||||
GPL14372_Probes_63969 | ||||||
Microarray_results | GPL14372_Probes_63968 | |||||
GPL14372_Probes_63969 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.9929 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.3439 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |