WormBase Tree Display for CDS: PPA35605
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| PPA35605 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-93.0 | ||
| DB_remark | PPA-NMR-1 protein; contains similarity to Pfam domains PF00060 (Ligand-gated ion channel), PF00497 (Bacterial extracellular solute-binding proteins, family 3), PF01094 (Receptor family ligand binding region), PF10601 (LITAF-like zinc ribbon domain); contains similarity to Interpro domains IPR001638 (Solute-binding protein family 3/N-terminal domain of MltF), IPR006629 (LPS-induced tumour necrosis factor alpha factor), IPR001320 (Ionotropic glutamate receptor, C-terminal), IPR001828 (Receptor, ligand binding region), IPR028082 (Periplasmic binding protein-like I) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00273974 | ||||
| Corresponding_transcript | PPA35605.1 | |||||
| Corresponding_protein | PP51537 | |||||
| RNASeq_FPKM | WBls:0000032 | 1.06965 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
