WormBase Tree Display for CDS: PPA35662
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PPA35662 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 110 | |||
227 | 305 | |||||
465 | 509 | |||||
569 | 678 | |||||
1277 | 1337 | |||||
1382 | 1471 | |||||
1517 | 1643 | |||||
1706 | 1818 | |||||
1885 | 2004 | |||||
2047 | 2290 | |||||
2334 | 2450 | |||||
2494 | 2621 | |||||
2669 | 2737 | |||||
2819 | 2920 | |||||
3054 | 3137 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S13-7.64 | ||
DB_remark | PPA-UNC-38 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00274031 | ||||
Corresponding_transcript | PPA35662.1 | |||||
Corresponding_protein | PP61641 | |||||
RNASeq_FPKM | WBls:0000032 | 18.5029 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |