WormBase Tree Display for CDS: PPA36152
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PPA36152 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 36 | |||
258 | 341 | |||||
440 | 470 | |||||
648 | 744 | |||||
791 | 944 | |||||
1141 | 1300 | |||||
1344 | 1419 | |||||
1557 | 1563 | |||||
1631 | 1789 | |||||
3874 | 3954 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-13.77 | ||
DB_remark | contains similarity to Pfam domain PF00097 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR018957 (Zinc finger, C3HC4 RING-type), IPR000163 (Prohibitin), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00274521 | ||||
Corresponding_transcript | PPA36152.1 | |||||
Corresponding_protein | PP61040 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |