WormBase Tree Display for CDS: PPA36211
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| PPA36211 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 142 | |||
| 290 | 443 | |||||
| 585 | 702 | |||||
| 793 | 939 | |||||
| 1006 | 1524 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-21.66 | ||
| DB_remark | contains similarity to Pfam domains PF00076 (RNA recognition motif), PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR035979 (RNA-binding domain superfamily), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00274580 | ||||
| Corresponding_transcript | PPA36211.1 | |||||
| Corresponding_protein | PP60413 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
