WormBase Tree Display for CDS: PPA36301
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PPA36301 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-35.30 | ||
DB_remark | contains similarity to Pfam domain PF02892 (BED zinc finger); contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR003656 (Zinc finger, BED-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
End_not_found | ||||||
Visible | Gene | WBGene00274670 | ||||
Corresponding_transcript | PPA36301.1 | |||||
Corresponding_protein | PP04448 | |||||
Corresponding_oligo_set | GPL14372_Probes_85257 | |||||
GPL14372_Probes_85258 | ||||||
GPL14372_Probes_85259 | ||||||
GPL14372_Probes_85260 | ||||||
GPL14372_Probes_85261 | ||||||
Microarray_results | GPL14372_Probes_85257 | |||||
GPL14372_Probes_85258 | ||||||
GPL14372_Probes_85259 | ||||||
GPL14372_Probes_85260 | ||||||
GPL14372_Probes_85261 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.97869 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 03 Jul 2019 16:56:52 | WBPerson4055 | ||||
Remark | [190703 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |