WormBase Tree Display for CDS: PPA36306
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PPA36306 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 117 | |||
1657 | 1798 | |||||
2067 | 2128 | |||||
2171 | 2362 | |||||
2460 | 2557 | |||||
2602 | 2725 | |||||
2791 | 2905 | |||||
2996 | 3069 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-36.67 | ||
DB_remark | contains similarity to Pfam domains PF02878 (Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I), PF02879 (Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II); contains similarity to Interpro domains IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III), IPR005841 (Alpha-D-phosphohexomutase superfamily), IPR005845 (Alpha-D-phosphohexomutase, alpha/beta/alpha domain II), IPR005844 (Alpha-D-phosphohexomutase, alpha/beta/alpha domain I) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00274675 | ||||
Corresponding_transcript | PPA36306.1 | |||||
Corresponding_protein | PP60546 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |