WormBase Tree Display for CDS: PPA36354
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PPA36354 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-44.42 | ||
DB_remark | PPA-CPF-1 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF16699 (Cleavage stimulation factor subunit 1, dimerisation domain); contains similarity to Interpro domains IPR032028 (Cleavage stimulation factor subunit 1, dimerisation domain), IPR001680 (WD40 repeat), IPR038184 (CSTF1, dimerization domain superfamily), IPR036322 (WD40-repeat-containing domain superfamily), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00274723 | ||||
Corresponding_transcript | PPA36354.1 | |||||
Corresponding_protein | PP75296 | |||||
Corresponding_oligo_set | GPL14372_Probes_77947 | |||||
GPL14372_Probes_77948 | ||||||
GPL14372_Probes_77949 | ||||||
GPL14372_Probes_77952 | ||||||
GPL14372_Probes_77953 | ||||||
Matching_cDNA | AI986846 | Inferred_automatically | transcript_builder.pl | |||
AW114686 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_77947 | |||||
GPL14372_Probes_77948 | ||||||
GPL14372_Probes_77949 | ||||||
GPL14372_Probes_77952 | ||||||
GPL14372_Probes_77953 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.51004 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.56699 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 25 Sep 2019 11:28:46 | WBPerson4055 | ||||
Remark | [190925 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |