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WormBase Tree Display for CDS: PPA36354

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Name Class

PPA36354EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrII
StructureSource_exons (14)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S41-44.42
DB_remarkPPA-CPF-1 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF16699 (Cleavage stimulation factor subunit 1, dimerisation domain); contains similarity to Interpro domains IPR032028 (Cleavage stimulation factor subunit 1, dimerisation domain), IPR001680 (WD40 repeat), IPR038184 (CSTF1, dimerization domain superfamily), IPR036322 (WD40-repeat-containing domain superfamily), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00274723
Corresponding_transcriptPPA36354.1
Corresponding_proteinPP75296
Corresponding_oligo_setGPL14372_Probes_77947
GPL14372_Probes_77948
GPL14372_Probes_77949
GPL14372_Probes_77952
GPL14372_Probes_77953
Matching_cDNAAI986846Inferred_automaticallytranscript_builder.pl
AW114686Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_77947
GPL14372_Probes_77948
GPL14372_Probes_77949
GPL14372_Probes_77952
GPL14372_Probes_77953
RNASeq_FPKMWBls:00000321.51004From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.56699From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed25 Sep 2019 11:28:46WBPerson4055
Remark[190925 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated