WormBase Tree Display for CDS: PPA36390
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PPA36390 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (43) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-49.18 | ||
DB_remark | contains similarity to Pfam domains PF00069 (Protein kinase domain), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR000719 (Protein kinase domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00274759 | ||||
Corresponding_transcript | PPA36390.1 | |||||
Corresponding_protein | PP57770 | |||||
Corresponding_oligo_set | GPL14372_Probes_46021 | |||||
Microarray_results | GPL14372_Probes_46021 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.05291 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |