WormBase Tree Display for CDS: PPA36489
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PPA36489 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (78) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-57.65 | ||
DB_remark | contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00096 (Zinc finger, C2H2 type), PF13445 (RING-type zinc-finger), PF17902 (SH3 domain); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR041615 (Desmoplakin, SH3 domain), IPR011009 (Protein kinase-like domain superfamily), IPR036236 (Zinc finger C2H2 superfamily), IPR027370 (Zinc finger, RING-type, eukaryotic), IPR000719 (Protein kinase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00274858 | ||||
Corresponding_transcript | PPA36489.1 | |||||
Corresponding_protein | PP51128 | |||||
Corresponding_oligo_set | GPL14372_Probes_78922 | |||||
GPL14372_Probes_78923 | ||||||
Microarray_results | GPL14372_Probes_78922 | |||||
GPL14372_Probes_78923 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.35287 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |