WormBase Tree Display for CDS: PPA36550
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PPA36550 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 285 | |||
331 | 405 | |||||
537 | 617 | |||||
733 | 855 | |||||
978 | 1082 | |||||
1632 | 1793 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-62.51 | ||
DB_remark | contains similarity to Pfam domain PF00079 (Serpin (serine protease inhibitor)); contains similarity to Interpro domains IPR036186 (Serpin superfamily), IPR042178 (Serpin superfamily, domain 1), IPR000215 (Serpin family), IPR042185 (Serpin superfamily, domain 2), IPR023796 (Serpin domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00274919 | ||||
Corresponding_transcript | PPA36550.1 | |||||
Corresponding_protein | PP56769 | |||||
Corresponding_oligo_set | GPL14372_Probes_34855 | |||||
Microarray_results | GPL14372_Probes_34855 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |