WormBase Tree Display for CDS: PPA36937
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| PPA36937 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (17) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-10.0 | ||
| DB_remark | contains similarity to Pfam domains PF04072 (Leucine carboxyl methyltransferase), PF06417 (Protein of unknown function (DUF1077)); contains similarity to Interpro domains IPR009445 (TMEM85/ER membrane protein complex subunit 4), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR016651 (Leucine carboxyl methyltransferase 1), IPR007213 (Methyltransferase Ppm1/Ppm2/Tcmp) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00275306 | ||||
| Corresponding_transcript | PPA36937.1 | |||||
| Corresponding_protein | PP70380 | |||||
| Corresponding_oligo_set | GPL14372_Probes_68653 | |||||
| GPL14372_Probes_68654 | ||||||
| GPL14372_Probes_68655 | ||||||
| GPL14372_Probes_68658 | ||||||
| GPL14372_Probes_68659 | ||||||
| GPL14372_Probes_68660 | ||||||
| GPL14372_Probes_68661 | ||||||
| Matching_cDNA | FG103192 | Inferred_automatically | transcript_builder.pl | |||
| FG101603 | Inferred_automatically | transcript_builder.pl | ||||
| FG102851 | Inferred_automatically | transcript_builder.pl | ||||
| FG106377 | Inferred_automatically | transcript_builder.pl | ||||
| CN657652 | Inferred_automatically | transcript_builder.pl | ||||
| FG103544 | Inferred_automatically | transcript_builder.pl | ||||
| FG106120 | Inferred_automatically | transcript_builder.pl | ||||
| FG105323 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_68653 | |||||
| GPL14372_Probes_68654 | ||||||
| GPL14372_Probes_68655 | ||||||
| GPL14372_Probes_68658 | ||||||
| GPL14372_Probes_68659 | ||||||
| GPL14372_Probes_68660 | ||||||
| GPL14372_Probes_68661 | ||||||
| RNASeq_FPKM | WBls:0000032 | 17.453 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 12.8828 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
