WormBase Tree Display for CDS: PPA36974
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PPA36974 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 340 | |||
475 | 542 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-16.66 | ||
DB_remark | contains similarity to Pfam domain PF00125 (Core histone H2A/H2B/H3/H4); contains similarity to Interpro domains IPR009072 (Histone-fold), IPR000558 (Histone H2B), IPR007125 (Histone H2A/H2B/H3) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00275343 | ||||
Corresponding_transcript | PPA36974.1 | |||||
PPA36974.2 | ||||||
Corresponding_protein | PP59087 | |||||
Matching_cDNA (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 81.7668 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 128.148 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |