WormBase Tree Display for CDS: PPA36986
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PPA36986 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 60 | |||
214 | 302 | |||||
584 | 722 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-18.10 | ||
DB_remark | PPA-COA-5 protein; contains similarity to Pfam domain PF10203 (Cytochrome c oxidase assembly protein PET191); contains similarity to Interpro domain IPR018793 (Cytochrome c oxidase assembly protein PET191) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00275355 | ||||
Corresponding_transcript | PPA36986.1 | |||||
Corresponding_protein | PP66293 | |||||
Matching_cDNA | FG097521 | Inferred_automatically | transcript_builder.pl | |||
FG097461 | Inferred_automatically | transcript_builder.pl | ||||
FG099222 | Inferred_automatically | transcript_builder.pl | ||||
AA193982 | Inferred_automatically | transcript_builder.pl | ||||
FG100813 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000032 | 68.0176 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 48.2345 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |