WormBase Tree Display for CDS: PPA36993
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PPA36993 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-19.78 | ||
DB_remark | contains similarity to Pfam domains PF00017 (SH2 domain), PF00018 (SH3 domain), PF14604 (Variant SH3 domain); contains similarity to Interpro domains IPR036860 (SH2 domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001452 (SH3 domain), IPR000980 (SH2 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00275362 | ||||
Corresponding_transcript | PPA36993.1 | |||||
Corresponding_protein | PP56179 | |||||
Corresponding_oligo_set | GPL14372_Probes_62382 | |||||
GPL14372_Probes_62383 | ||||||
Matching_cDNA | FG096804 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_62382 | |||||
GPL14372_Probes_62383 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.49131 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |