WormBase Tree Display for CDS: PPA36995
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| PPA36995 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (27) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-19.82 | ||
| DB_remark | contains similarity to Pfam domains PF01431 (Peptidase family M13), PF05649 (Peptidase family M13); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR042089 (Peptidase M13, domain 2), IPR018497 (Peptidase M13, C-terminal domain), IPR000718 (Peptidase M13), IPR008753 (Peptidase M13, N-terminal domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00275364 | ||||
| Corresponding_transcript | PPA36995.1 | |||||
| Corresponding_protein | PP68992 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54894 | |||||
| GPL14372_Probes_54895 | ||||||
| GPL14372_Probes_54896 | ||||||
| GPL14372_Probes_54897 | ||||||
| GPL14372_Probes_54898 | ||||||
| Matching_cDNA | FE933443 | Inferred_automatically | transcript_builder.pl | |||
| EB182565 | Inferred_automatically | transcript_builder.pl | ||||
| EB183801 | Inferred_automatically | transcript_builder.pl | ||||
| EB183861 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_54894 | |||||
| GPL14372_Probes_54895 | ||||||
| GPL14372_Probes_54896 | ||||||
| GPL14372_Probes_54897 | ||||||
| GPL14372_Probes_54898 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.67759 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 35.2016 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
