WormBase Tree Display for CDS: PPA37012
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PPA37012 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-24.1 | ||
DB_remark | contains similarity to Pfam domain PF07934 (8-oxoguanine DNA glycosylase, N-terminal domain); contains similarity to Interpro domains IPR023170 (Helix-hairpin-helix, base-excision DNA repair, C-terminal), IPR012904 (8-oxoguanine DNA glycosylase, N-terminal), IPR003265 (HhH-GPD domain), IPR011257 (DNA glycosylase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00275381 | ||||
Corresponding_transcript | PPA37012.1 | |||||
Corresponding_protein | PP66561 | |||||
Corresponding_oligo_set | GPL14372_Probes_55090 | |||||
GPL14372_Probes_55091 | ||||||
GPL14372_Probes_55092 | ||||||
Microarray_results | GPL14372_Probes_55090 | |||||
GPL14372_Probes_55091 | ||||||
GPL14372_Probes_55092 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.59 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |