WormBase Tree Display for CDS: PPA37032
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| PPA37032 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (53) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-28.8 | ||
| DB_remark | PPA-DNJ-25 protein; contains similarity to Pfam domain PF00069 (Protein kinase domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR001680 (WD40 repeat), IPR029021 (Protein-tyrosine phosphatase-like), IPR000719 (Protein kinase domain), IPR036869 (Chaperone J-domain superfamily), IPR036322 (WD40-repeat-containing domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00275401 | ||||
| Corresponding_transcript | PPA37032.1 | |||||
| Corresponding_protein | PP56392 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55203 | |||||
| GPL14372_Probes_55204 | ||||||
| GPL14372_Probes_55205 | ||||||
| GPL14372_Probes_55206 | ||||||
| GPL14372_Probes_55207 | ||||||
| GPL14372_Probes_55208 | ||||||
| Matching_cDNA | AW115130 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_55203 | |||||
| GPL14372_Probes_55204 | ||||||
| GPL14372_Probes_55205 | ||||||
| GPL14372_Probes_55206 | ||||||
| GPL14372_Probes_55207 | ||||||
| GPL14372_Probes_55208 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.91522 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.68852 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
