WormBase Tree Display for CDS: PPA37070
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| PPA37070 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-38.67 | ||
| DB_remark | contains similarity to Pfam domains PF02770 (Acyl-CoA dehydrogenase, middle domain), PF14749 (Acyl-coenzyme A oxidase N-terminal); contains similarity to Interpro domains IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR029320 (Acyl-coenzyme A oxidase, N-terminal), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00275439 | ||||
| Corresponding_transcript | PPA37070.1 | |||||
| Corresponding_protein | PP56702 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55508 | |||||
| GPL14372_Probes_55509 | ||||||
| GPL14372_Probes_55510 | ||||||
| GPL14372_Probes_55511 | ||||||
| GPL14372_Probes_55512 | ||||||
| GPL14372_Probes_55513 | ||||||
| Matching_cDNA | FG098804 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_55508 | |||||
| GPL14372_Probes_55509 | ||||||
| GPL14372_Probes_55510 | ||||||
| GPL14372_Probes_55511 | ||||||
| GPL14372_Probes_55512 | ||||||
| GPL14372_Probes_55513 | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.98132 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.65181 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
