WormBase Tree Display for CDS: PPA37071
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PPA37071 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 55 | |||
134 | 196 | |||||
466 | 539 | |||||
626 | 730 | |||||
931 | 1000 | |||||
1110 | 1150 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-38.70 | ||
DB_remark | contains similarity to Pfam domain PF02271 (Ubiquinol-cytochrome C reductase complex 14kD subunit); contains similarity to Interpro domains IPR036544 (Cytochrome b-c1 complex subunit 7 superfamily), IPR003197 (Cytochrome b-c1 complex subunit 7) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00275440 | ||||
Corresponding_transcript | PPA37071.1 | |||||
Corresponding_protein | PP06194 | |||||
Corresponding_oligo_set | GPL14372_Probes_55491 | |||||
Matching_cDNA | AI988870 | Inferred_automatically | transcript_builder.pl | |||
FE936838 | Inferred_automatically | transcript_builder.pl | ||||
FE933256 | Inferred_automatically | transcript_builder.pl | ||||
FG095966 | Inferred_automatically | transcript_builder.pl | ||||
FG101636 | Inferred_automatically | transcript_builder.pl | ||||
FG105712 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_55491 | |||||
RNASeq_FPKM | WBls:0000032 | 150.914 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 401.215 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |