WormBase Tree Display for CDS: PPA37118
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PPA37118 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (63) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-48.47 | ||
DB_remark | contains similarity to Pfam domains PF07500 (Transcription factor S-II (TFIIS), central domain), PF07744 (SPOC domain); contains similarity to Interpro domains IPR003618 (Transcription elongation factor S-II, central domain), IPR036575 (Transcription elongation factor S-II, central domain superfamily), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00275487 | ||||
Corresponding_transcript | PPA37118.1 | |||||
Corresponding_protein | PP58419 | |||||
Corresponding_oligo_set | GPL14372_Probes_55779 | |||||
GPL14372_Probes_55780 | ||||||
Matching_cDNA | AA193888 | Inferred_automatically | transcript_builder.pl | |||
FE940616 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_55779 | |||||
GPL14372_Probes_55780 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.516391 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |