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WormBase Tree Display for CDS: PPA37118

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Name Class

PPA37118SMapS_parentSequencePPA_ChrI
StructureSource_exons (63)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-48.47
DB_remarkcontains similarity to Pfam domains PF07500 (Transcription factor S-II (TFIIS), central domain), PF07744 (SPOC domain); contains similarity to Interpro domains IPR003618 (Transcription elongation factor S-II, central domain), IPR036575 (Transcription elongation factor S-II, central domain superfamily), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00275487
Corresponding_transcriptPPA37118.1
Corresponding_proteinPP58419
Corresponding_oligo_setGPL14372_Probes_55779
GPL14372_Probes_55780
Matching_cDNAAA193888Inferred_automaticallytranscript_builder.pl
FE940616Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_55779
GPL14372_Probes_55780
RNASeq_FPKMWBls:00000320.516391From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated