WormBase Tree Display for CDS: PPA37674
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PPA37674 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 105 | |||
394 | 525 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-42.59 | ||
DB_remark | contains similarity to Pfam domain PF00444 (Ribosomal protein L36); contains similarity to Interpro domains IPR035977 (Large ribosomal subunit protein bL36 superfamily), IPR000473 (Large ribosomal subunit protein bL36) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00276043 | ||||
Corresponding_transcript | PPA37674.1 | |||||
Corresponding_protein | PP29218 | |||||
Corresponding_oligo_set | GPL14372_Probes_86756 | |||||
GPL14372_Probes_86757 | ||||||
GPL14372_Probes_86758 | ||||||
Matching_cDNA | FG099750 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_86756 | |||||
GPL14372_Probes_86757 | ||||||
GPL14372_Probes_86758 | ||||||
RNASeq_FPKM | WBls:0000032 | 27.2274 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |